\hypertarget{classalgorithm}{\section{algorithm \-Class \-Reference}
\label{classalgorithm}\index{algorithm@{algorithm}}
}
\subsection*{\-Public \-Member \-Functions}
\begin{DoxyCompactItemize}
\item 
\hypertarget{classalgorithm_ad09ee937065ddca6b70203d13ba1d5e0}{{\bfseries algorithm} (double delta, double \-T0, int size, \hyperlink{classoutput}{output} \&out0)}\label{classalgorithm_ad09ee937065ddca6b70203d13ba1d5e0}

\item 
\hypertarget{classalgorithm_a02bd275393011c6614c44ac0bf0c04af}{double {\bfseries get\-\_\-time} ()}\label{classalgorithm_a02bd275393011c6614c44ac0bf0c04af}

\item 
\hypertarget{classalgorithm_a409d315ecfefe72bbd24716469f61632}{void {\bfseries update\-\_\-time} ()}\label{classalgorithm_a409d315ecfefe72bbd24716469f61632}

\item 
\hypertarget{classalgorithm_a9fc2ddb7e26a23f7a856b050bf0d80d5}{vector$<$ double $>$ {\bfseries probability} (int n)}\label{classalgorithm_a9fc2ddb7e26a23f7a856b050bf0d80d5}

\item 
\hypertarget{classalgorithm_a2d45552c71484dd8949ea7a9a778451f}{vector$<$ double $>$ {\bfseries sigma} (\hyperlink{classeffective__ensemble}{effective\-\_\-ensemble} \&eff)}\label{classalgorithm_a2d45552c71484dd8949ea7a9a778451f}

\item 
\hypertarget{classalgorithm_ac0d80c2d3d04b643c640892e84069f18}{void {\bfseries make\-\_\-transition} (int source, vector$<$ int $>$ target, vector$<$ double $>$ p)}\label{classalgorithm_ac0d80c2d3d04b643c640892e84069f18}

\item 
\hypertarget{classalgorithm_ab3410171d1600b0d5a2d7a758523df7c}{void {\bfseries det\-\_\-evol} (\hyperlink{classeffective__ensemble}{effective\-\_\-ensemble} \&eff, \hyperlink{classchannels}{channels} \&chans)}\label{classalgorithm_ab3410171d1600b0d5a2d7a758523df7c}

\item 
\hypertarget{classalgorithm_a5b29e83ebd8682a62c924d4620b7575d}{void {\bfseries jumps} (\hyperlink{classeffective__ensemble}{effective\-\_\-ensemble} \&eff, \hyperlink{classchannels}{channels} \&chans, transition\-\_\-map tmap\mbox{[}$\,$\mbox{]})}\label{classalgorithm_a5b29e83ebd8682a62c924d4620b7575d}

\item 
\hypertarget{classalgorithm_abf586b2ba83e804f2337a94cb88c3dd8}{void {\bfseries apply} (\hyperlink{classeffective__ensemble}{effective\-\_\-ensemble} \&eff, \hyperlink{classchannels}{channels} \&chans, transition\-\_\-map tmap\mbox{[}$\,$\mbox{]})}\label{classalgorithm_abf586b2ba83e804f2337a94cb88c3dd8}

\item 
\hypertarget{classalgorithm_aafa2318432b36540cd0894ec38303a84}{\hyperlink{classoutput}{output} {\bfseries get\-\_\-output} ()}\label{classalgorithm_aafa2318432b36540cd0894ec38303a84}

\item 
\hypertarget{classalgorithm_afdb583a1d939f836d4ca0a03a47c880a}{void {\bfseries print\-\_\-to\-\_\-files} ()}\label{classalgorithm_afdb583a1d939f836d4ca0a03a47c880a}

\end{DoxyCompactItemize}


\-The documentation for this class was generated from the following files\-:\begin{DoxyCompactItemize}
\item 
include/\hyperlink{algorithm_8hpp}{algorithm.\-hpp}\item 
src/algorithm.\-cpp\end{DoxyCompactItemize}
